2024-10-02
: 18445 3D structures containing nucleic acids | RNAEQ
v3.355all
DNA
RNA
DNA+RNA
Hybrid
PNA
Protein
+
-
Ligand
≥0.2 kDa
≥1 kDa
X-ray
EM
NMR
Resolution Limits (Å)
NA Feature
antiparallel double helix
A-form double helix
B-form double helix
Z-form double helix
parallel helix
I-motif
triple helix
quadruplex
quadruplex, ONQUADRO-annotated
G-quadruplex, G4DSSR-annotated
racemic structure
only standard nucleotides (A,G,C,T,U,I)
DNA mispair
NDB Music Atlas-annotated
…
DNATCO Confal Analysis
RNA Equiv Class (RNAEQ)-annotated
RNACentral-annotated
RNACentral R2DT diagrams
Rfam-annotated
…
Aptamer
Holliday junction
Ribosomal RNA
Riboswitch
Ribozyme or DNAzyme
Transfer RNA
Telomere
…
Unannotated (NA, no protein)
Protein Feature
…Enzyme…
Polymerase
Nuclease
Helicase
Recombinase
Isomerase
Lyase
Ligase/Synthetase
…Regulatory…
CRISPR
Splicing
Gene Silencing
Transcription
Translation
Post-transcriptional
Replication/Repair
…Structural…
Antibody
Nucleosome
Ribosome
Spliceosome
Telomere
Virus
……
DNAproDB analysis
3DFootPrint analysis
……
Unannotated (prot)
Ligand Feature
polymer-like/antibiotic
intercalation
bis-intercalation
minor groove binder
major groove binder
covalently linked
metal coordinating (Pt,Rh,Ru)
……
Unannotated (ligand)
#NA chains
any
1
2
3
4
≥5
Additional Filters
NA sequence
NA count
for any chain in entry
for all chains in entry
Date Range
Released
Deposited
Published
Last Update
Deposited MW (kDa)
Published
Experimental Data
Representative RNA Set
Founding/non-PDB Structures
Batch Ids
Crystal Space Group
inversion/mirror/glide symmetry
Primitive lattice (P*)
C-face centered lattice (C*)
All-face centered lattice (F*)
Body-centered lattice (I*)
Hexagonally-centered lattice (H*)
Rhombohedrally-centered lattice (R*)
C 1 2 1
C 1 2/c 1
C 2 2 2
C 2 2 21
F 2 2 2
F 2 3
F 4 3 2
H -3
H 3
H 3 2
I 1 2 1
I 2 2 2
I 2 3
I 21 21 21
I 21 3
I 4
I 4 2 2
I 4 3 2
I 41
I 41 2 2
I 41 3 2
P -1
P 1
P 1 1 21
P 1 2 1
P 1 21 1
P 1 21/c 1
P 1 21/n 1
P 2 2 21
P 2 21 21
P 2 3
P 21 2 21
P 21 21 2
P 21 21 21
P 21 3
P 3
P 3 1 2
P 3 2 1
P 31
P 31 1 2
P 31 2 1
P 32
P 32 1 2
P 32 2 1
P 4 3
P 4 2 2
P 4 21 2
P 41
P 41 2 2
P 41 21 2
P 41 3 2
P 42
P 42 2 2
P 42 21 2
P 42 3 2
P 43
P 43 2 2
P 43 21 2
P 43 3 2
P 6
P 6 2 2
P 61
P 61 2 2
P 62
P 62 2 2
P 63
P 63 2 2
P 64
P 64 2 2
P 65
P 65 2 2
P b c a
P n n a
R 3 2
Cell Lengths (Å)
Cell Angles (°)
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NAKB ID
Release Date ↑
Release Date ↓
Deposit Date ↑
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Resolution (Xray/EM) ↑
Resolution (Xray/EM) ↓
Deposited MW ↑
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DNATCO score ↑
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