2024-02-28 : 17336 3D structures containing nucleic acids | RNAEQ v3.324all
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Full NAKB accession id list csv json Complete current list of structures indexed by NAKB, with mappings to PDB and NDB ids, polymer composition, and abbreviated experimental method. NAKB's primary index is the PDB id for all PDB entries. The NDB id is only used as primary index id for NDB-only entries. NAKB atlas pages can be called up by inserting either the PDB or NDB id (case insensitive) in the URL (/atlas=id). The csv and json links can be used for programmatic access.
NAKB annotations csv json Expert protein annotations curated by NAKB, updated weekly, based on NDB annotation scheme. Supports new annotation tree views.
NDB annotations csv json Expert protein annotations manually curated by NDB. Xray and NMR only, no longer updated as of January 2023.
NDB/NAKB-only structures Assemblies mmCIF PDB format Structure Factors Historically important high resolution DNA and RNA crystal structures that were originally deposited in the Cambridge Structural Database, mainly consisting of dinucleotides.
Ideal DNA models NAKB intro DNA duplexes in A-form, B-form, and Z-form, generated using ideal fiber parameters. Download links are provided for model coordinates (PDB format). Source: Web-x3DNA fiber building tool.
NAKB logo png(med) png(large) svg Comprised of a generic nucleic acid strand making use of NDB colors (green: guanine, red: adenine, yellow: cytosine, blue: thymine, cyan: uracil) connected to a database symbol. Created by Maria Voigt (RCSB PDB).
Structure files by id set RCSB PDB Download Service Structure files for multiple PDB ids can be downloaded in bulk via the provided RCSB PDB link. To obtain a list of ids from NAKB search, first navigate to the tabular report page, then click on the ↓Ids button to download the id list.